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One option is to install them via via Perl modules The dependencies of PsNR need some system packages to be installed. automatically unless you are experienced in installing and configuring PsN.īefore you install PsN on Linux or MacOS, you should make sure that the required programs and modules are installed on your computer. It is highly recommended to let the installation script create psn.conf. The default settings are probably the best for most users. Read all messages carefully and answer the questions on screen. Sudo can be skipped if you already have write permissions in the installation directories you intend to use. Open a terminal, cd to the PsN-Source directory and type: sudo perl and ↵. It will create a directory called PsN-Source. Unpack the file you downloaded from the PsN Download Page. Run the following commands (hit ↵ after each command), prepend sudo if necessary:.You might need to answer some questions interactively when using the cpan command. To be able to use the automatic rplotting functionality (via the -rplots option) and/or the qa tool the following needs to be installed: Installing system dependencies for plotting and reporting Under add for example default=C:\nm744,7.4.4 if your NONMEM version is 7.4.4 and can be found under C:\nm744īefore installing PsN on Linux, you should make sure that the required programs are installed on your computer.Īpt install python3 python3-venv python3-dev Add your NONMEM version by editing the PsN configuration file at PsN-5.2.6\strawberry\perl\site\lib\PsN_5_2_6\psn.conf.
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Update your PATH environment variable to include the path to PsN-5.2.6\strawberry\perl\bin.The unpacked directory can be put at any location on your computer. Unpack the file you downloaded from the PsN Download Page.Everything is tested together and nothing should interfere with any other installations of the same software that you might have on your computer. Included is PsN itself, perl, R, python, perl packages, R packages, python packages and pharmpy. PsN comes bundled with all its dependencies to make it easier to install. Verify that you can run NONMEM in parallel directly with the nmfe script. If you plan to use the parallelization features of NONMEM you must also If running NONMEM with nmfe/ does not work then PsN will not work either.
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Verify that all NONMEM installations you intend to use can be run directly via the nmfe/autolog scripts and that they produce complete output files. PsN supports standard and NMQual 8 installations of NONMEM.